PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024492
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 226aa    MW: 24624.8 Da    PI: 4.7126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024492genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.76.9e-143987255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r++   g+Wv+eIr+p++   + r++lg+f  ae Aa+a++ a+++l+g
  Lus10024492 39 NYRGIRYRG--GKWVSEIREPRK---TNRIWLGTFPAAEIAAAAYDVAALALKG 87
                 69****975..*********854...49**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-83887IPR001471AP2/ERF domain
SMARTSM003801.4E-2539101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-253996IPR001471AP2/ERF domain
PROSITE profilePS5103219.6123995IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-163996IPR016177DNA-binding domain
PRINTSPR003671.7E-64051IPR001471AP2/ERF domain
CDDcd000181.05E-114097No hitNo description
PRINTSPR003671.7E-67797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MADPYNNYYN NSYPAPHPNN NNAPTNSTSP PPSSSKHPNY RGIRYRGGKW VSEIREPRKT  60
NRIWLGTFPA AEIAAAAYDV AALALKGDEA VLNFPEAAHS YPIPASSSAA DIRNAAAAAA  120
AIKKDEIMRA TWSSSTSIND HNHEQGLTSN FNEFGSGATA NYNYSGGDQF VDEEALFDMP  180
NLLVNMAQGM MVSPPRFPTY DDGCYYSQED DHTCNGDSLW TSGYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-133595163ATERF1
3gcc_A4e-133595163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033804.14e-57PREDICTED: ethylene-responsive transcription factor ERF026-like
TrEMBLB9GW612e-56B9GW61_POPTR; AP2 domain-containing family protein
STRINGPOPTR_0003s12120.15e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.14e-30ERF family protein